EMBOSS explorer

supermatcher

Finds a match of a large sequence against one or more sequences (read the manual)

Unshaded fields are optional and can safely be ignored. (hide optional fields)

Input section

Select an input sequence. Use one of the following three fields:

  1. To access a sequence from a database, enter the USA here:
  2. To upload a sequence from your local computer, select it here:
  3. To enter the sequence data manually, type here:

Select an input sequence. Use one of the following three fields:

  1. To access a sequence from a database, enter the USA here:
  2. To upload a sequence from your local computer, select it here:
  3. To enter the sequence data manually, type here:

Matrix file. Use one of the following two fields:

  1. To access a standard EMBOSS data file, enter the name here: (default is EBLOSUM62 for protein, EDNAFULL for nucleic)
  2. To upload a data file from your local computer, select it here:
Required section
Gap opening penalty (default is 10.0 for any sequence type)
Gap extension penalty (default is 0.5 for any sequence type)
Additional section
Alignment width
Word length for initial matching
Output section
Output alignment format
Run section
Email address: If you are submitting a long job and would like to be informed by email when it finishes, enter your email address here.